the 1:21 interlude that comes before Bavarian Fruit Bread is in fact a track from the previous song, Clear Day. If you turn your stereo up loud for about the first second of it, you can hear the guitar parts from Clear Day, which are quickly faded away, leaving just the organ sound. After listening to 1:21, go back and listen to the end part of clear day, and you'll hear it mixed in there.
Funny that the BFB reissue has a missing track; i almost bought a copy to go with the 2 copies of the original pressing I already own. I always found it odd how they messed up the track listing, even on iTunes, how amateurish!
But damn, Bavarian Fruit Bread (the song) just kills me, what an awesome lyric, it would make a great country song. As one of you mentioned about the way she says "Cry", its the second time she says it that's really special, along with the kick drum, the way they hit at just the right time, it just kicks me right in the gut, it's a golden moment, amazing. Strangely though, i don't hear it that way every time.